MIT License. Turning Tools. Star 6. Uspplies Xcode If nothing happens, download Xcode and try again. Updated Jan 5, Component Pascal. Packages 0 No packages published.

Remember to keep it updated with git pull. Lathe has been adapted to run on multiple samples simultaneously, instead of one sample per snakemake command. The pipeline can now take in either. The config file has been changed to reflect this. You now provide sample information and datasets in a tab-delimited file, and indicate this file in the config. See config. Don't change this. Lathe uses the Flye assembler by default.

For Canu, please specify 'canu' for the assembler parameter in the config. For cluster Canu execution, please note: if set to True, you will need to install Canu, e. Please see the example config file. When executing on a cluster, Canu will appear to fail, as the first process does not produce an assembly and instead spawns subsequent jobs on the cluster.

Don't worry, just re-run Lathe when the assembly completes. To execute please run the following. The tutorial can be run using the provided config file and input data within the tutorial folder. This tutorial uses pre-basecalled long read data to reduce total file sizes and performs assembly with Flye and short read polishing.

To reduce runtime, this tutorial skips basecalling, long read polishing, and circularization steps. With cluster execution enabled, this tutorial should be completed in under 6 hours.

To run the tutorial:. Skip to content. A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing MIT License. Branches Tags. Nothing to show. Go back. Launching Xcode If nothing happens, download Xcode and try again. Latest commit. Git stats commits. Failed to load latest commit information. Circularization assembly now uses Flye. Sundry bugfixes. Jul 16, Forked from GRBL modified for use on a lathe with spindle sync threading.

Arduino firmware for interfacing with a common DC motor controller. Free App for calculating dimensions of spacer s needed for off center turning on a lathe. One spacer, two spacers or a "flat"can be selected for calculation. HTM-based error model of desktop lathe, originally written for course 2. Fanuc CNC Macroprogram 32i to fast design and turn parts on cnc lathe.

The ability to read TTL Square wave using robogaia x,y,z decoder. Add a description, image, and links to the lathe topic page so that developers can more easily learn about it.

Curate this topic. To associate your repository with the lathe topic, visit your repo's landing page and select "manage topics. Learn more. Skip to content. Here are 21 public repositories matching this topic Language: All Filter by language. Sort options. Star Code Issues Pull requests. Updated Feb 21, Julia. A cnc web simulator. Updated Oct 9, JavaScript. Sponsor Star 9. Updated Nov 25, Python. Star 7. Updated Oct 27, C. Star 6. Updated Feb 9, C.

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